BIF713 - Operating Systems and Project Management

Outline information
Semester
Schools offering this subject
Last revision date 2018-09-10 11:36:14.905
Last review date 2018-09-10 11:36:14.905

Subject Title
Operating Systems and Project Management

Subject Description
The aim of this course is to provide the students with hands-on analysis experience required in the workforce. The students will begin learning the linux operating system and learn to complete tasks using basic linux commands and utilities. They will gain access to a high-performance compute cluster and learn how to install tools and submit and monitor jobs. Students will be introduced to the basics of project management including writing project proposals. Students will then be introduced to high throughput sequencing data. They will learn how to align this data and run basic quality control metrics. They will use open source tools that are commonly used in the field.

Credit Status
One credit towards the Bioinformatics (BIF) post-diploma program.

Prerequisites: none

Learning Outcomes
Upon successful completion of this subject the student will be able to:

  • Demonstrate an understanding of the linux operating system including the use of environment variables and basic linux commands.
  • Demonstrate an understanding of a high-performance computer cluster and the ability to submit and monitor jobs.
  • Describes the basics of project management.
  • Write a project proposal.
  • Describe next-generation sequencing (NGS), the current use of this technology and the impact it has had on the field.
  • Describe what an alignment is and demonstrate the ability to align the raw sequence data to a reference genome using standard tools.
  • Describe the biases that exist in NGS data and how to address them computationally.
  • Describe the standard data formats used in the field (SAM/BAM and VCF formats).

Academic Integrity
Seneca upholds a learning community that values academic integrity, honesty, fairness, trust, respect, responsibility and courage. These values enhance Seneca's commitment to deliver high-quality education and teaching excellence, while supporting a positive learning environment. Ensure that you are aware of Seneca's Academic Integrity Policy which can be found at: http://www.senecacollege.ca/about/policies/academic-integrity-policy.html Review section 2 of the policy for details regarding approaches to supporting integrity. Section 2.3 and Appendix B of the policy describe various sanctions that can be applied, if there is suspected academic misconduct (e.g., contract cheating, cheating, falsification, impersonation or plagiarism).

Please visit the Academic Integrity website http://open2.senecac.on.ca/sites/academic-integrity/for-students to understand and learn more about how to prepare and submit work so that it supports academic integrity, and to avoid academic misconduct.

Discrimination/Harassment
All students and employees have the right to study and work in an environment that is free from discrimination and/or harassment. Language or activities that defeat this objective violate the College Policy on Discrimination/Harassment and shall not be tolerated. Information and assistance are available from the Student Conduct Office at student.conduct@senecacollege.ca.

Accommodation for Students with Disabilities
The College will provide reasonable accommodation to students with disabilities in order to promote academic success. If you require accommodation, contact the Counselling and Accessibility Services Office at ext. 22900 to initiate the process for documenting, assessing and implementing your individual accommodation needs.